I’ve been riding motorcycles for almost a million miles total for 58 years. The last 4 motorcycles, thre modern ECU Guzzis and this FTR. I’ve upgraded the exhaust on all and never had any issues. My FTR is NOT running to rich. With the change from 49 tooth rear sprocket to 42 I’m averaging 50 mpg. My FTR always pulled the front wheel at 6000 even befor exhaust and sprocket change. I’ve lost nothing. I asked my dealer about this and they told me not to worry.Serious, modern ECU's cannot correct the absence of the resonator. That's like cutting off half of a trombone hoping the lips of the musician will adjust for that so that it sounds the same. It doesn't. In closed loop it will correct as much as it can, but open the throttle and it will run worse... Running too rich can lead to carbon build up over time btw, sticky rings, valves not closing properly....
What you're probably feeling around 6000 rpm is getting out of the torque dip.
Just be careful
My FTR has all the cake I can eat. I don’t want or need more cake. I’m not on a race course, although I do ride with spirit. I’ve put down over 9,200 miles in 4-1/2 months. Been over the ton on occasion passing. Pull the front wheel quite a lot.You do you sir. Just never ride an FTR that has a tune. Ignorance is bliss.
Oh, so this is stock vs Dynojet tune. I would find it interesting to see a dyno run with the cat delete and S&S can added into the equation just to have actual numbers rather than just saying or supposing by best guess info. Not disputing your hypothesis but I'd like to see actual factual info. If I was able to se that, then I'd be more receptive. My dealer told me they didn't have a tune and not to worry. Also, I have no idea where I could get a tune near me.